Additional material for

Moderated estimation of fold change and dispersion for RNA-Seq data with DESeq2

by Michael I Love, Wolfgang Huber, and Simon Anders

This page provides access to additional material for our paper on DESeq2, namely to all R code and scripts used to produce the figures and benchmark results in the paper.

Paper package

The R package DESeq2paper contains all code, data and vignettes and is available as a tarball. The package for previous version of the paper is provided for archival purposes:

DESeq2 package

The R package DESeq2 can be obtained from the Bioconductor website.


The following vignettes are all included in the package but can be downloaded here separately


For the scripts used for the benchmarking, see the directory /inst/script/ in the tarball, or the files here:

R data objects